Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylornithine carbamoyltransferase | BACCOPRO_01300 | Not Available | Positive | 1320807 - 1321844 | 39443.5 |
| rhodanese-like protein | BACCOPRO_01301 | Not Available | Negative | 1321922 - 1322320 | 15063.8 |
| hypothetical protein | BACCOPRO_01302 | Not Available | Negative | 1322345 - 1323001 | 24755.4 |
| hypothetical protein | BACCOPRO_01303 | Not Available | Negative | 1322998 - 1324152 | 44740.7 |
| hypothetical protein | BACCOPRO_01304 | Not Available | Negative | 1324154 - 1324342 | 7346.34 |
| d-ala d-ala ligase n-terminal domain protein | BACCOPRO_01305 | Not Available | Negative | 1324320 - 1325333 | 37663.2 |
| pseudouridine synthase, rlua family | BACCOPRO_01306 | Not Available | Negative | 1325303 - 1326367 | 40561.4 |
| pasta domain protein | BACCOPRO_01307 | Not Available | Negative | 1326393 - 1327040 | 24055.0 |
| ribosomal protein l34 | BACCOPRO_01308 | Not Available | Negative | 1327188 - 1327349 | 6201.58 |
| translation elongation factor p | BACCOPRO_01309 | Not Available | Positive | 1327540 - 1328106 | 21361.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


