Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ll-diaminopimelate aminotransferase | BACCOPRO_01290 | Not Available | Positive | 1311186 - 1312415 | 45845.0 |
| hypothetical protein | BACCOPRO_01291 | Not Available | Positive | 1312455 - 1312663 | 7980.63 |
| hypothetical protein | BACCOPRO_01292 | Not Available | Positive | 1313239 - 1313376 | 5172.27 |
| hypothetical protein | BACCOPRO_01293 | Not Available | Positive | 1313397 - 1314056 | 25455.8 |
| radical sam domain protein | BACCOPRO_01294 | Not Available | Negative | 1314127 - 1315224 | 42183.3 |
| hypothetical protein | BACCOPRO_01295 | Not Available | Negative | 1315221 - 1315664 | 16680.3 |
| beta galactosidase small chain | BACCOPRO_01296 | Not Available | Negative | 1315880 - 1318990 | 118205.0 |
| transglycosylase slt domain protein | BACCOPRO_01297 | Not Available | Negative | 1319022 - 1319990 | 37496.1 |
| hypothetical protein | BACCOPRO_01298 | Not Available | Negative | 1320004 - 1320474 | 17531.5 |
| hypothetical protein | BACCOPRO_01299 | Not Available | Negative | 1320471 - 1320701 | 8151.85 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


