Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| quinolinate synthetase complex, a subunit | BACCOPRO_00120 | Not Available | Negative | 120643 - 121620 | 36297.9 |
| hypothetical protein | BACCOPRO_00121 | Not Available | Negative | 121620 - 121832 | 8533.86 |
| rna methyltransferase, trmh family | BACCOPRO_00122 | Not Available | Positive | 121954 - 122625 | 25621.1 |
| hypothetical protein | BACCOPRO_00123 | Not Available | Negative | 122620 - 123225 | 23683.3 |
| hypothetical protein | BACCOPRO_00124 | Not Available | Positive | 123311 - 125356 | 80063.5 |
| hypothetical protein | BACCOPRO_00125 | Not Available | Positive | 125624 - 126187 | 21188.3 |
| sulfate permease | BACCOPRO_00126 | Not Available | Negative | 126271 - 127956 | 60917.0 |
| rubrerythrin | BACCOPRO_00127 | Not Available | Positive | 128172 - 128750 | 21637.5 |
| phosphopyruvate hydratase | BACCOPRO_00128 | Not Available | Positive | 128943 - 130226 | 46276.2 |
| Trna-asp | Not Available | Not Available | Positive | 130461 - 130537 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


