Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_01280 | Not Available | Positive | 1303640 - 1304119 | 18124.5 |
| pyridoxal phosphate enzyme, yggs family | BACCOPRO_01281 | Not Available | Positive | 1304126 - 1304794 | 25475.7 |
| putative dihydroorotate dehydrogenase 2 | BACCOPRO_01282 | Not Available | Positive | 1304809 - 1305783 | 35590.5 |
| hypothetical protein | BACCOPRO_01283 | Not Available | Negative | 1305772 - 1305894 | 4513.66 |
| amp-binding enzyme | BACCOPRO_01284 | Not Available | Positive | 1305986 - 1307638 | 62409.8 |
| hypothetical protein | BACCOPRO_01285 | Not Available | Positive | 1307649 - 1308754 | 38434.5 |
| hypothetical protein | BACCOPRO_01286 | Not Available | Negative | 1308982 - 1309113 | 4803.93 |
| hypothetical protein | BACCOPRO_01287 | Not Available | Positive | 1309189 - 1309374 | 7169.56 |
| cyclic nucleotide-binding domain protein | BACCOPRO_01288 | Not Available | Negative | 1309424 - 1310020 | 22979.3 |
| hypothetical protein | BACCOPRO_01289 | Not Available | Negative | 1310063 - 1310905 | 30670.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


