Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosyl-atp diphosphatase | BACCOPRO_01270 | Not Available | Positive | 1291095 - 1291709 | 23450.8 |
| abc transporter, atp-binding protein | BACCOPRO_01271 | Not Available | Positive | 1291687 - 1292394 | 26881.6 |
| amino acid kinase family | BACCOPRO_01272 | Not Available | Positive | 1292519 - 1293838 | 49197.1 |
| diaminopimelate decarboxylase | BACCOPRO_01273 | Not Available | Positive | 1293972 - 1295132 | 42784.3 |
| glycosyltransferase, group 2 family protein | BACCOPRO_01274 | Not Available | Positive | 1295286 - 1296452 | 44474.8 |
| hypothetical protein | BACCOPRO_01275 | Not Available | Negative | 1296550 - 1298742 | 84863.9 |
| cyclic nucleotide-binding domain protein | BACCOPRO_01276 | Not Available | Positive | 1298860 - 1299561 | 26578.4 |
| efflux abc transporter, permease protein | BACCOPRO_01277 | Not Available | Negative | 1299654 - 1300901 | 46050.6 |
| aminotransferase, class i/ii | BACCOPRO_01278 | Not Available | Negative | 1300901 - 1302103 | 45111.2 |
| hypothetical protein | BACCOPRO_01279 | Not Available | Positive | 1302309 - 1303544 | 46267.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


