Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_01260 | Not Available | Negative | 1284463 - 1284819 | 13039.9 |
| ribosomal protein s16 | BACCOPRO_01261 | Not Available | Negative | 1284816 - 1285364 | 19654.2 |
| hypothetical protein | BACCOPRO_01262 | Not Available | Negative | 1285471 - 1286322 | 31433.3 |
| oligopeptide transporter, opt family | BACCOPRO_01263 | Not Available | Negative | 1286344 - 1288332 | 70004.4 |
| hypothetical protein | BACCOPRO_01264 | Not Available | Negative | 1288445 - 1288591 | 6005.6 |
| Trna-asp | Not Available | Not Available | Positive | 1288602 - 1288675 | Not Available |
| hypothetical protein | BACCOPRO_01266 | Not Available | Negative | 1288688 - 1288840 | 6004.44 |
| imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | BACCOPRO_01267 | Not Available | Positive | 1288927 - 1289517 | 22095.6 |
| putative 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | BACCOPRO_01268 | Not Available | Positive | 1289568 - 1290287 | 26379.8 |
| imidazoleglycerol phosphate synthase, cyclase subunit | BACCOPRO_01269 | Not Available | Positive | 1290310 - 1291065 | 27131.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


