Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cation diffusion facilitator family transporter | BACCOPRO_01250 | Not Available | Negative | 1271740 - 1273584 | 69266.8 |
| efflux transporter, rnd family, mfp subunit | BACCOPRO_01251 | Not Available | Negative | 1273596 - 1274672 | 39051.9 |
| putative phosphoribosylglycinamide formyltransferase 2 | BACCOPRO_01252 | Not Available | Negative | 1275209 - 1276378 | 42968.7 |
| pspc domain protein | BACCOPRO_01253 | Not Available | Negative | 1276441 - 1277487 | 39125.4 |
| transcriptional regulator, padr family | BACCOPRO_01254 | Not Available | Negative | 1277493 - 1277828 | 13020.9 |
| acetyltransferase, gnat family | BACCOPRO_01255 | Not Available | Positive | 1277986 - 1278504 | 20161.1 |
| hypothetical protein | BACCOPRO_01256 | Not Available | Negative | 1278602 - 1279846 | 46344.2 |
| hypothetical protein | BACCOPRO_01257 | Not Available | Negative | 1280044 - 1281564 | 56798.9 |
| rela/spot family protein | BACCOPRO_01258 | Not Available | Positive | 1281699 - 1283915 | 84506.2 |
| hypothetical protein | BACCOPRO_01259 | Not Available | Positive | 1284002 - 1284397 | 14216.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


