Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_01240 | Not Available | Positive | 1257789 - 1258439 | 25067.9 |
| hypothetical protein | BACCOPRO_01242 | Not Available | Negative | 1258465 - 1259205 | 29115.1 |
| hypothetical protein | BACCOPRO_01241 | Not Available | Positive | 1259164 - 1259346 | 6590.07 |
| efflux transporter, outer membrane factor lipoprotein, nodt family | BACCOPRO_01243 | Not Available | Negative | 1259343 - 1260788 | 54069.2 |
| putative atp synthase f0, a subunit | BACCOPRO_01244 | Not Available | Negative | 1260769 - 1263912 | 115489.0 |
| efflux transporter, rnd family, mfp subunit | BACCOPRO_01245 | Not Available | Negative | 1263924 - 1265072 | 43670.3 |
| hypothetical protein | BACCOPRO_01246 | Not Available | Negative | 1265165 - 1265500 | 12917.0 |
| hypothetical protein | BACCOPRO_01247 | Not Available | Negative | 1265764 - 1269024 | 123411.0 |
| outer membrane efflux protein | BACCOPRO_01248 | Not Available | Negative | 1269035 - 1270522 | 56903.6 |
| hypothetical protein | BACCOPRO_01249 | Not Available | Negative | 1270503 - 1271771 | 47668.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


