Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative thioredoxin | BACCOPRO_01230 | Not Available | Positive | 1249375 - 1249671 | 11194.8 |
| transglycosylase slt domain protein | BACCOPRO_01231 | Not Available | Negative | 1249679 - 1251058 | 51358.4 |
| uridine kinase | BACCOPRO_01232 | Not Available | Negative | 1251055 - 1251666 | 23265.6 |
| stress responsive a/b barrel domain protein | BACCOPRO_01233 | Not Available | Positive | 1251739 - 1252044 | 11542.9 |
| atp phosphoribosyltransferase | BACCOPRO_01234 | Not Available | Positive | 1252256 - 1253107 | 31215.1 |
| histidinol dehydrogenase | BACCOPRO_01235 | Not Available | Positive | 1253131 - 1254414 | 46805.0 |
| histidinol-phosphate transaminase | BACCOPRO_01236 | Not Available | Positive | 1254418 - 1255458 | 39633.6 |
| histidinol-phosphatase | BACCOPRO_01237 | Not Available | Positive | 1255469 - 1256590 | 42770.1 |
| hypothetical protein | BACCOPRO_01238 | Not Available | Negative | 1256709 - 1256885 | 6696.9 |
| transcriptional regulator, luxr family | BACCOPRO_01239 | Not Available | Negative | 1256922 - 1257710 | 30437.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


