Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetolactate synthase, large subunit, biosynthetic type | BACCOPRO_01200 | Not Available | Negative | 1214378 - 1216081 | 62220.0 |
| dihydroxy-acid dehydratase | BACCOPRO_01201 | Not Available | Negative | 1216096 - 1217850 | 62203.9 |
| peptidyl-prolyl cis-trans isomerase, fkbp-type | BACCOPRO_01202 | Not Available | Positive | 1218352 - 1219026 | 24505.7 |
| hypothetical protein | BACCOPRO_01203 | Not Available | Positive | 1219099 - 1219932 | 31157.5 |
| hypothetical protein | BACCOPRO_01204 | Not Available | Positive | 1219948 - 1220652 | 26398.7 |
| putative ribosomal protein s1 | BACCOPRO_01205 | Not Available | Positive | 1220925 - 1222712 | 66657.8 |
| na+/h+ antiporter family protein | BACCOPRO_01206 | Not Available | Positive | 1222793 - 1224151 | 48385.7 |
| oxidoreductase, short chain dehydrogenase/reductase family protein | BACCOPRO_01207 | Not Available | Positive | 1224208 - 1224601 | 14503.5 |
| hypothetical protein | BACCOPRO_01208 | Not Available | Positive | 1224604 - 1224894 | 10543.6 |
| hypothetical protein | BACCOPRO_01209 | Not Available | Positive | 1225008 - 1225283 | 10087.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


