Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding regulatory protein, yebc/pmpr family | BACCOPRO_01180 | Not Available | Negative | 1194781 - 1195512 | 27516.3 |
| hypothetical protein | BACCOPRO_01181 | Not Available | Negative | 1195545 - 1195775 | 8825.85 |
| phenylalanine--trna ligase, beta subunit | BACCOPRO_01182 | Not Available | Negative | 1195788 - 1198250 | 90854.8 |
| replicative dna helicase | BACCOPRO_01183 | Not Available | Negative | 1198348 - 1199713 | 50503.8 |
| hypothetical protein | BACCOPRO_01184 | Not Available | Negative | 1199714 - 1199846 | 4876.94 |
| hypothetical protein | BACCOPRO_01185 | Not Available | Negative | 1199928 - 1200047 | 4338.15 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | BACCOPRO_01186 | Not Available | Positive | 1200097 - 1200924 | 30748.1 |
| pseudouridine synthase, rlua family | BACCOPRO_01187 | Not Available | Positive | 1200928 - 1202571 | 62697.9 |
| hypothetical protein | BACCOPRO_01188 | Not Available | Positive | 1202676 - 1203227 | 21311.3 |
| hypothetical protein | BACCOPRO_01189 | Not Available | Negative | 1203302 - 1205485 | 81565.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


