Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein, omp85 family | BACCOPRO_01170 | Not Available | Negative | 1184896 - 1185984 | 42298.1 |
| surface antigen variable number repeat protein | BACCOPRO_01171 | Not Available | Negative | 1185985 - 1187120 | 44305.4 |
| rna methyltransferase, trmh family | BACCOPRO_01172 | Not Available | Positive | 1187293 - 1188045 | 28027.8 |
| hypothetical protein | BACCOPRO_01173 | Not Available | Negative | 1188070 - 1188396 | 11990.5 |
| hypothetical protein | BACCOPRO_01174 | Not Available | Negative | 1188393 - 1189319 | 35052.7 |
| signal peptidase ii | BACCOPRO_01175 | Not Available | Negative | 1189324 - 1189959 | 24040.7 |
| putative rna polymerase-binding protein dksa | BACCOPRO_01176 | Not Available | Negative | 1190050 - 1190430 | 14391.2 |
| isoleucine--trna ligase | BACCOPRO_01177 | Not Available | Negative | 1190499 - 1193987 | 132581.0 |
| hypothetical protein | BACCOPRO_01178 | Not Available | Negative | 1194274 - 1194393 | 4766.11 |
| conserved hypothetical protein tigr03905 | BACCOPRO_01179 | Not Available | Negative | 1194438 - 1194683 | 8784.71 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


