Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m protein repeat protein | BACCOPRO_01160 | Not Available | Positive | 1169585 - 1173247 | 144217.0 |
| alpha-l-fucosidase | BACCOPRO_01161 | Not Available | Negative | 1173441 - 1174856 | 54199.6 |
| hypothetical protein | BACCOPRO_01162 | Not Available | Positive | 1175279 - 1175740 | 16248.4 |
| hypothetical protein | BACCOPRO_01163 | Not Available | Positive | 1175737 - 1176468 | 27354.1 |
| tonb-dependent receptor | BACCOPRO_01164 | Not Available | Positive | 1176513 - 1178675 | 81813.1 |
| cobn/magnesium chelatase domain protein | BACCOPRO_01165 | Not Available | Positive | 1178713 - 1182867 | 155837.0 |
| hypothetical protein | BACCOPRO_01166 | Not Available | Positive | 1182883 - 1183575 | 25603.5 |
| transporter, mota/tolq/exbb proton channel family protein | BACCOPRO_01167 | Not Available | Positive | 1183601 - 1184203 | 22442.9 |
| hypothetical protein | BACCOPRO_01168 | Not Available | Positive | 1184200 - 1184529 | 12406.9 |
| hypothetical protein | BACCOPRO_01169 | Not Available | Negative | 1184629 - 1184871 | 9428.37 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


