Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-asp | Not Available | Not Available | Positive | 1161135 - 1161211 | Not Available |
| putative acr, cog1678 | BACCOPRO_01151 | Not Available | Positive | 1161437 - 1162027 | 22249.7 |
| acetyltransferase, gnat family | BACCOPRO_01152 | Not Available | Negative | 1162016 - 1162546 | 20309.2 |
| hypothetical protein | BACCOPRO_01153 | Not Available | Negative | 1162549 - 1163016 | 17828.5 |
| recombination protein recr | BACCOPRO_01154 | Not Available | Negative | 1163031 - 1163711 | 25020.4 |
| ribosome biogenesis gtp-binding protein ysxc | BACCOPRO_01155 | Not Available | Positive | 1163844 - 1164458 | 23307.3 |
| glycosyl hydrolase family 20, catalytic domain protein | BACCOPRO_01156 | Not Available | Positive | 1164455 - 1166416 | 73772.5 |
| hypothetical protein | BACCOPRO_01157 | Not Available | Negative | 1166501 - 1167532 | 39450.4 |
| hypothetical protein | BACCOPRO_01158 | Not Available | Positive | 1167752 - 1168981 | 48492.2 |
| hypothetical protein | BACCOPRO_01159 | Not Available | Positive | 1169017 - 1169601 | 23245.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


