Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_01140 | Not Available | Negative | 1153574 - 1154026 | 17250.1 |
| hypothetical protein | BACCOPRO_01141 | Not Available | Negative | 1153938 - 1154165 | 8403.12 |
| dna topoisomerase | BACCOPRO_01142 | Not Available | Negative | 1154194 - 1156284 | 77565.1 |
| hypothetical protein | BACCOPRO_01143 | Not Available | Negative | 1156347 - 1157548 | 45606.4 |
| hypothetical protein | BACCOPRO_01144 | Not Available | Negative | 1157549 - 1157950 | 15225.9 |
| hypothetical protein | BACCOPRO_01145 | Not Available | Negative | 1157971 - 1158321 | 13914.9 |
| hypothetical protein | BACCOPRO_01146 | Not Available | Positive | 1158591 - 1158878 | 11129.6 |
| dna binding domain, excisionase family | BACCOPRO_01147 | Not Available | Positive | 1158875 - 1159207 | 13069.8 |
| death-on-curing family protein | BACCOPRO_01148 | Not Available | Negative | 1159274 - 1159651 | 14464.6 |
| site-specific recombinase, phage integrase family | BACCOPRO_01149 | Not Available | Negative | 1159658 - 1160896 | 48198.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


