Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative atp synthase, subunit e | BACCOPRO_01120 | Not Available | Negative | 1124410 - 1125000 | 21883.1 |
| hypothetical protein | BACCOPRO_01121 | Not Available | Positive | 1125318 - 1125501 | 7201.54 |
| acetyltransferase, gnat family | BACCOPRO_01122 | Not Available | Negative | 1125555 - 1126700 | 44076.6 |
| divergent aaa domain protein | BACCOPRO_01123 | Not Available | Negative | 1126703 - 1128157 | 54956.9 |
| rtec protein | BACCOPRO_01124 | Not Available | Negative | 1128284 - 1128901 | 23857.8 |
| hypothetical protein | BACCOPRO_01125 | Not Available | Negative | 1129141 - 1129563 | 16106.2 |
| sigma-54 interaction domain protein | BACCOPRO_01126 | Not Available | Negative | 1129843 - 1131165 | 49815.3 |
| atpase/histidine kinase/dna gyrase b/hsp90 domain protein | BACCOPRO_01127 | Not Available | Negative | 1131158 - 1133476 | 87548.5 |
| hypothetical protein | BACCOPRO_01128 | Not Available | Negative | 1133528 - 1133686 | 6270.46 |
| hypothetical protein | BACCOPRO_01129 | Not Available | Negative | 1133709 - 1135301 | 58397.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


