Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_01090 | Not Available | Positive | 1089129 - 1090526 | 52466.5 |
| glycosyl hydrolase, family 57 | BACCOPRO_01091 | Not Available | Negative | 1090769 - 1092145 | 52267.6 |
| glycosyltransferase, group 1 family protein | BACCOPRO_01092 | Not Available | Negative | 1092163 - 1093431 | 48026.8 |
| putative glycogen debranching enzyme, archaeal type | BACCOPRO_01093 | Not Available | Negative | 1093446 - 1095398 | 75188.8 |
| serine--trna ligase | BACCOPRO_01094 | Not Available | Negative | 1095629 - 1096906 | 47850.3 |
| hypothetical protein | BACCOPRO_01095 | Not Available | Negative | 1097023 - 1098222 | 45332.0 |
| 3-deoxy-8-phosphooctulonate synthase | BACCOPRO_01096 | Not Available | Negative | 1098229 - 1099032 | 29383.8 |
| lipid kinase, yegs/rv2252/bmru family | BACCOPRO_01097 | Not Available | Negative | 1099035 - 1099967 | 35143.5 |
| trna dimethylallyltransferase | BACCOPRO_01098 | Not Available | Negative | 1099971 - 1100891 | 35629.0 |
| glyceraldehyde-3-phosphate dehydrogenase, type i | BACCOPRO_01099 | Not Available | Negative | 1101041 - 1102051 | 35959.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


