Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_01080 | Not Available | Positive | 1080342 - 1080551 | 7501.1 |
| hypothetical protein | BACCOPRO_01081 | Not Available | Positive | 1080687 - 1080818 | 4646.67 |
| hypothetical protein | BACCOPRO_01082 | Not Available | Positive | 1080820 - 1081248 | 16827.5 |
| relaxase/mobilization nuclease domain protein | BACCOPRO_01083 | Not Available | Positive | 1081227 - 1082477 | 46947.1 |
| trag family protein | BACCOPRO_01084 | Not Available | Positive | 1082510 - 1083436 | 35670.6 |
| reverse transcriptase (rna-dependent dna polymerase) | BACCOPRO_01085 | Not Available | Positive | 1084073 - 1085725 | 64611.4 |
| trag family protein | BACCOPRO_01086 | Not Available | Positive | 1085730 - 1086764 | 38756.8 |
| aspartate 1-decarboxylase | BACCOPRO_01087 | Not Available | Negative | 1086819 - 1087169 | 12759.5 |
| pantoate--beta-alanine ligase | BACCOPRO_01088 | Not Available | Negative | 1087176 - 1088075 | 33809.8 |
| starch synthase catalytic domain protein | BACCOPRO_01089 | Not Available | Positive | 1088257 - 1089108 | 32456.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


