Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | DSM 18228 = JCM 13818 strain DSM 18228 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1028335 bp
Thymine Count
1064266 bp
Guanine Count
898775 bp
Cytosine Count
864067 bp
Genome Length
3855443 bp
Protein-coding Genes
3838 genes
Non-Coding Genes
69 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BACCOPRO_01050 | Not Available | Negative | 1056314 - 1056691 | 14627.3 |
| sigma-70 region 2 | BACCOPRO_01051 | Not Available | Negative | 1056743 - 1057294 | 21784.7 |
| hypothetical protein | BACCOPRO_01053 | Not Available | Negative | 1057367 - 1057789 | 15805.9 |
| hypothetical protein | BACCOPRO_01052 | Not Available | Positive | 1057772 - 1058137 | 13479.9 |
| succinate coa transferase | BACCOPRO_01054 | Not Available | Negative | 1058300 - 1059790 | 54176.9 |
| hypothetical protein | BACCOPRO_01055 | Not Available | Positive | 1059893 - 1060027 | 5406.99 |
| Trna-thr | Not Available | Not Available | Positive | 1060127 - 1060199 | Not Available |
| hypothetical protein | BACCOPRO_01057 | Not Available | Negative | 1060368 - 1060731 | 13994.4 |
| glutamate--ammonia ligase, catalytic domain protein | BACCOPRO_01058 | Not Available | Positive | 1060732 - 1062723 | 74695.6 |
| trka c-terminal domain protein | BACCOPRO_01059 | Not Available | Positive | 1062916 - 1064577 | 59520.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


