Pedobacter sp. Leaf176

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. Leaf176 is a bacterial strain characterized by the presence of flagella, which suggests that it is motile. This motility can be advantageous in various environments, allowing the organism to move toward favorable conditions or away from harmful substances. The strain has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and stability within its environment. The accession number for Pedobacter sp. Leaf176 is LMPD00000000.1, which serves as a reference for researchers looking to access genetic and genomic data regarding this specific strain. In terms of ecological insights, the motility conferred by flagella may play a significant role in the ecological interactions of Pedobacter sp. Leaf176 within its habitat. This capability could enhance its ability to colonize specific niches, access nutrients, and potentially interact with other microbial communities. The single replicon structure may also reflect an evolutionary adaptation that allows the strain to thrive in its specific ecological context, possibly enabling it to efficiently respond to environmental changes. Thus, understanding the traits of Pedobacter sp. Leaf176 provides valuable information about its potential roles and functions in microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. Leaf176
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. Leaf176


Gene Summary

Adenine Count

1464836 bp

Thymine Count

1464126 bp

Guanine Count

912928 bp

Cytosine Count

911696 bp

Genome Length

4753721 bp

Protein-coding Genes

4054 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinASF92_00010Not AvailableNegative1289 - 246744329.1
hypothetical proteinASF92_00015Not AvailablePositive2644 - 371141876.8
lyttr family transcriptional regulatorASF92_00020P94514Positive3708 - 439126356.3
hypothetical proteinASF92_00025Not AvailablePositive4723 - 533421699.1
alpha-l-arabinofuranosidaseASF92_00030Not AvailablePositive5551 - 814297073.0
abc transporter permeaseASF92_00035Q68XW4Positive8325 - 913129000.5
abc transporter atp-binding proteinASF92_00040Not AvailablePositive9135 - 991428841.8
abc transporter permeaseASF92_00045Not AvailablePositive9917 - 1088835185.8
hypothetical proteinASF92_00050Not AvailableNegative11002 - 112238366.1
alpha-ketoglutarate transporterASF92_00055P0AEX3Positive11676 - 1298348175.6

Displaying genes 1 – 10 of 4101 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

203 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 203 metabolites

Health Effects

No health effects information available for this bacterium.