Pedobacter sp. Leaf216

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. Leaf216 is a bacterial strain characterized by the presence of flagella, which suggests it possesses the capability for motility. This trait may contribute to its ecological adaptability in various environments. The strain contains a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and cellular function. The accession number for Pedobacter sp. Leaf216 is LMKM00000000.1, which provides a reference for genetic and genomic studies related to this strain. The genomic data can aid in understanding its metabolic pathways, ecological roles, and potential applications in biotechnological contexts. The presence of flagella in Pedobacter sp. Leaf216 may play a significant role in its ecological interactions, allowing it to navigate its environment effectively. This motility could enhance its ability to colonize specific niches and engage in competitive interactions with other microorganisms. Furthermore, Pedobacter species are typically known for their role in the decomposition of organic matter, which suggests that this strain may be involved in nutrient cycling within its ecosystem. Overall, the characteristics of Pedobacter sp. Leaf216 highlight its potential significance in ecological processes, particularly in the breakdown of organic materials and the dynamics of microbial communities. Further research could elucidate the specific ecological roles and potential applications of this strain in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. Leaf216
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. Leaf216


Gene Summary

Adenine Count

1755576 bp

Thymine Count

1756181 bp

Guanine Count

1065701 bp

Cytosine Count

1102433 bp

Genome Length

5680060 bp

Protein-coding Genes

4730 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s ribosomal rnaNot AvailableNot AvailablePositive61 - 1587Not Available
hypothetical proteinASE74_00010Not AvailableNegative1852 - 214210331.0
hypothetical proteinASE74_00015Not AvailableNegative2283 - 24927970.16
hypothetical proteinASE74_00020Not AvailablePositive3008 - 438150193.8
serine hydroxymethyltransferaseASE74_00025A5FEF4Negative4625 - 589645797.5
chromosome segregation protein scpaASE74_00030B2V486Negative5959 - 670228626.6
1-deoxy-d-xylulose-5-phosphate synthaseASE74_00035Q11NY7Positive6914 - 884270210.4
gliding motility protein rembASE74_00040Not AvailableNegative9274 - 1090261661.7
undecaprenyl-phosphate glucose phosphotransferaseASE74_00045Q48460Negative11010 - 1240154047.2
mannose-1-phosphate guanylyltransferaseASE74_00050Not AvailableNegative12662 - 1375940820.6

Displaying genes 1 – 10 of 796 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

34 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001827nonanoateC9H17O2Chemical structure of nonanoateNot available
Average157.234Da
Monoisotopic157.123403367Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 34 metabolites

Health Effects

No health effects information available for this bacterium.