Pedobacter sp. PACM 27299

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter sp. PACM 27299 is a specific bacterial strain that possesses notable characteristics pertinent to its classification and potential applications. A significant feature of this strain is the presence of flagella, which are crucial for motility. This enables Pedobacter sp. PACM 27299 to move effectively in its environment, potentially enhancing its ability to colonize various niches. The genetic makeup of Pedobacter sp. PACM 27299 is characterized by a single replicon, indicating a straightforward chromosomal structure that may facilitate efficient replication and gene expression. The accession number associated with this strain is NZ_CP012996.1, which serves as a reference for researchers looking to access its genomic data. This genetic information can provide insights into the strain's metabolic capabilities and ecological interactions. Understanding the traits of Pedobacter sp. PACM 27299 can shed light on its role within microbial communities. The presence of flagella suggests that this organism may play a significant role in nutrient cycling or biogeochemical processes, as motility can influence its interaction with substrates and other microorganisms. These features may allow Pedobacter sp. PACM 27299 to thrive in diverse environments, potentially contributing to soil health and ecosystem functioning.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter sp. PACM 27299
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter sp. PACM 27299


Gene Summary

Adenine Count

1822271 bp

Thymine Count

1833018 bp

Guanine Count

1247907 bp

Cytosine Count

1244094 bp

Genome Length

6147290 bp

Protein-coding Genes

5116 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinAQ505_RS00010Not AvailableNegative3177 - 463153317.3
susc/raga family tonb-linked outer membrane proteinAQ505_RS00015Not AvailableNegative4642 - 7689111508.0
ragb/susd family nutrient uptake outer membrane proteinAQ505_RS00020Not AvailableNegative7990 - 956456395.6
tonb-dependent receptorAQ505_RS00025Not AvailableNegative9583 - 12720113320.0
hypothetical proteinAQ505_RS26265Not AvailablePositive12956 - 131025459.31
susd/ragb family nutrient-binding outer membrane lipoproteinAQ505_RS00030Not AvailableNegative13506 - 1495453394.0
susc/raga family tonb-linked outer membrane proteinAQ505_RS00035Not AvailableNegative14968 - 18162115323.0
m14 metallopeptidase family proteinAQ505_RS00040Not AvailableNegative18581 - 2108294376.7
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseAQ505_RS00045Not AvailablePositive21172 - 2247347812.1
duf6266 family proteinAQ505_RS00050Not AvailablePositive22770 - 2342023771.1

Displaying genes 1 – 10 of 5217 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.