Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. PACM 27299 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1822271 bp
Thymine Count
1833018 bp
Guanine Count
1247907 bp
Cytosine Count
1244094 bp
Genome Length
6147290 bp
Protein-coding Genes
5116 genes
Non-Coding Genes
101 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome silencing factor | AQ505_RS00305 | Not Available | Positive | 96833 - 97207 | 14195.7 |
| atp-dependent zinc metalloprotease ftsh | AQ505_RS00310 | Not Available | Positive | 97238 - 99328 | 77198.1 |
| lud domain-containing protein | AQ505_RS00315 | Not Available | Positive | 99386 - 100030 | 24643.7 |
| 3-oxoacyl-acp synthase iii family protein | AQ505_RS00320 | Not Available | Positive | 100097 - 101179 | 39510.2 |
| tol-pal system ybgf family protein | AQ505_RS00325 | Not Available | Negative | 101197 - 102693 | 56386.3 |
| zinc ribbon domain-containing protein | AQ505_RS00330 | Not Available | Negative | 102830 - 103573 | 28453.1 |
| nif3-like dinuclear metal center hexameric protein | AQ505_RS00335 | Not Available | Negative | 103573 - 104670 | 40631.9 |
| tm2 domain-containing protein | AQ505_RS00340 | Not Available | Negative | 104798 - 105157 | 13659.0 |
| duf2752 domain-containing protein | AQ505_RS00345 | Not Available | Negative | 105150 - 105476 | 12454.7 |
| transcription-repair coupling factor | AQ505_RS00350 | Not Available | Positive | 105589 - 108930 | 126750.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

