Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. PACM 27299 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1822271 bp
Thymine Count
1833018 bp
Guanine Count
1247907 bp
Cytosine Count
1244094 bp
Genome Length
6147290 bp
Protein-coding Genes
5116 genes
Non-Coding Genes
101 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | AQ505_RS00010 | Not Available | - | 3177 - 4631 | 53317.3 |
| susc/raga family tonb-linked outer membrane protein | AQ505_RS00015 | Not Available | - | 4642 - 7689 | 111508.0 |
| ragb/susd family nutrient uptake outer membrane protein | AQ505_RS00020 | Not Available | - | 7990 - 9564 | 56395.6 |
| tonb-dependent receptor | AQ505_RS00025 | Not Available | - | 9583 - 12720 | 113320.0 |
| hypothetical protein | AQ505_RS26265 | Not Available | + | 12956 - 13102 | 5459.31 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | AQ505_RS00030 | Not Available | - | 13506 - 14954 | 53394.0 |
| susc/raga family tonb-linked outer membrane protein | AQ505_RS00035 | Not Available | - | 14968 - 18162 | 115323.0 |
| m14 metallopeptidase family protein | AQ505_RS00040 | Not Available | - | 18581 - 21082 | 94376.7 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | AQ505_RS00045 | Not Available | + | 21172 - 22473 | 47812.1 |
| duf6266 family protein | AQ505_RS00050 | Not Available | + | 22770 - 23420 | 23771.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.