Shimia thalassica

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia thalassica is a Gram-negative bacterium characterized by a single replicon. Its genomic sequence is available under the accession number CYTW00000000.1. As a member of the microbial community, Shimia thalassica is notable for its specific ecological niche, likely contributing to the dynamics of its environment. The classification as Gram-negative indicates that Shimia thalassica possesses a thin peptidoglycan layer and an outer membrane, which can affect its interactions with other organisms and its response to antibiotics. The presence of a single replicon suggests a streamlined genetic organization, which may influence its replication and survival strategies. Understanding the traits of Shimia thalassica can provide insights into its role in marine ecosystems, particularly in nutrient cycling and interactions with other marine microorganisms. The genomic data available allows for further exploration of its metabolic pathways and potential applications in biotechnology or environmental monitoring.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia thalassica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shimia thalassica


Gene Summary

Adenine Count

954692 bp

Thymine Count

975031 bp

Guanine Count

1249958 bp

Cytosine Count

1178635 bp

Genome Length

4358316 bp

Protein-coding Genes

4047 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Large packaging proteinPH7735_01677Not AvailablePositive1818355 - 181965647791.1
Portal proteinPH7735_01678Q1RIH4Positive1819768 - 182094942697.3
hypothetical proteinPH7735_01679Not AvailablePositive1820942 - 18211698591.48
Putative prohead proteasePH7735_01680Not AvailablePositive1821197 - 182175120257.2
Phage major capsid proteinPH7735_01681Not AvailablePositive1821785 - 182296642039.2
phage gp6-like head-tail connector proteinPH7735_01682Not AvailablePositive1823115 - 182370821365.6
bacteriophage head-tail adaptorPH7735_01683Not AvailablePositive1823705 - 182404312308.7
hypothetical proteinPH7735_01684Not AvailablePositive1824040 - 182445014783.4
Gene transfer aget (gta) orfg9-like phage major tail proteinPH7735_01685Not AvailablePositive1824469 - 182488214495.9
hypothetical proteinPH7735_01686Not AvailablePositive1824885 - 182520810863.1

Displaying genes 1 – 10 of 4113 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

313 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 313 metabolites

Health Effects

No health effects information available for this bacterium.