Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| proteasome endopeptidase complex, archaeal, beta subunit | PH7735_00949 | Not Available | Positive | 993844 - 994578 | 26689.9 |
| transglutaminase-like superfamily protein | PH7735_00950 | Not Available | Negative | 994575 - 995483 | 32924.9 |
| hypothetical protein | PH7735_00951 | Q0RHA0 | Negative | 995487 - 997907 | 88039.2 |
| hypothetical protein | PH7735_00952 | Not Available | Negative | 997912 - 1001253 | 124142.0 |
| ribose-5-phosphate isomerase b | PH7735_00953 | P37351 | Positive | 1001529 - 1001978 | 15875.1 |
| aspartate aminotransferase | PH7735_00954 | Q56232 | Positive | 1002204 - 1003328 | 41028.4 |
| glycerol-3-phosphate regulon repressor | PH7735_00955 | P0ACL0 | Negative | 1003352 - 1004113 | 27453.1 |
| aerobic glycerol-3-phosphate dehydrogenase | PH7735_00956 | Q2YIQ2 | Positive | 1004390 - 1005997 | 60168.7 |
| sn-glycerol-3-phosphate import atp-binding protein ugpc | PH7735_00957 | Q9YGA6 | Positive | 1006012 - 1007100 | 39290.1 |
| sn-glycerol-3-phosphate import atp-binding protein ugpc | PH7735_00958 | Q8UII7 | Positive | 1007112 - 1008191 | 39438.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
