Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| quinone oxidoreductase 1 | PH7735_00939 | Q7T3C7 | Positive | 983503 - 984480 | 34655.9 |
| tspo/mbr family protein | PH7735_00940 | Q8KBX2 | Negative | 984532 - 984984 | 16787.2 |
| hypothetical protein | PH7735_00941 | Not Available | Negative | 985025 - 985468 | 16913.1 |
| complex i intermediate-associated protein 30 (cia30) | PH7735_00942 | Not Available | Positive | 985680 - 986237 | 20305.1 |
| c4-dicarboxylate transport sensor protein dctb | PH7735_00943 | Q9HU20 | Positive | 986400 - 988127 | 63526.7 |
| c4-dicarboxylate transport transcriptional regulatory protein dctd | PH7735_00944 | Not Available | Positive | 988124 - 989461 | 48793.0 |
| trap transporter solute receptor, dctp family | PH7735_00945 | Not Available | Positive | 989589 - 990599 | 36426.3 |
| trap-type c4-dicarboxylate transport system, small permease component | PH7735_00946 | Not Available | Positive | 990675 - 991307 | 22856.2 |
| neu5ac permease | PH7735_00947 | Not Available | Positive | 991319 - 992719 | 49196.9 |
| transglutaminase-like superfamily protein | PH7735_00948 | Not Available | Positive | 992920 - 993702 | 28434.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
