Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| neu5ac permease | PH7735_00929 | Not Available | Positive | 974866 - 975378 | 19538.3 |
| neu5ac permease | PH7735_00930 | Not Available | Positive | 975390 - 976718 | 46231.4 |
| sulfopropanediol 3-dehydrogenase | PH7735_00931 | Q5LVV1 | Positive | 976730 - 978037 | 46334.0 |
| gluconate 5-dehydrogenase | PH7735_00932 | P50199 | Positive | 978030 - 978791 | 26254.2 |
| putative l-galactonate oxidoreductase | PH7735_00933 | P0DOW0 | Positive | 978788 - 979786 | 34995.2 |
| universal stress protein f | PH7735_00934 | Not Available | Positive | 979790 - 980194 | 14450.3 |
| sulfopyruvate decarboxylase, alpha subunit | PH7735_00935 | Q6M060 | Positive | 980223 - 980729 | 18489.5 |
| acetolactate synthase catalytic subunit | PH7735_00936 | P58416 | Positive | 980726 - 981280 | 19565.7 |
| (s)-mandelate dehydrogenase | PH7735_00937 | Not Available | Positive | 981290 - 982471 | 42694.5 |
| hth-type transcriptional regulator gltc | PH7735_00938 | Q05840 | Negative | 982501 - 983388 | 32345.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
