Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-xylose-binding periplasmic protein precursor | PH7735_00919 | P37387 | Negative | 962893 - 963918 | 35022.0 |
| n-acetylglucosamine repressor | PH7735_00920 | D2PPN2 | Positive | 964158 - 965315 | 41452.5 |
| aspic and unbv | PH7735_00921 | Not Available | Positive | 965305 - 966846 | 56167.0 |
| cytochrome c551 peroxidase precursor | PH7735_00922 | Q49128 | Negative | 966840 - 968144 | 47252.2 |
| aldose 1-epimerase | PH7735_00923 | Q66HG4 | Negative | 968150 - 969139 | 35977.4 |
| xylose isomerase | PH7735_00924 | Q5LV46 | Negative | 969141 - 970445 | 48642.7 |
| xylulose kinase | PH7735_00925 | P29444 | Negative | 970442 - 971896 | 51396.8 |
| hth-type transcriptional repressor cytr | PH7735_00926 | B7VMG4 | Negative | 972215 - 973390 | 42800.7 |
| hypothetical protein | PH7735_00927 | Not Available | Positive | 973410 - 973586 | 6005.57 |
| c4-dicarboxylate-binding periplasmic protein precursor | PH7735_00928 | Q9HU18 | Positive | 973620 - 974768 | 41133.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
