Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alcohol dehydrogenase | PH7735_00909 | Not Available | Negative | 950885 - 952516 | 58735.0 |
| hth-type transcriptional repressor cytr | PH7735_00910 | P0ACN9 | Negative | 952649 - 953695 | 37154.6 |
| xylose import atp-binding protein xylg | PH7735_00911 | Q8UBN2 | Positive | 953900 - 955423 | 55256.1 |
| ribose transport system permease protein rbsc | PH7735_00912 | Not Available | Positive | 955420 - 956439 | 35406.2 |
| d-ribose-binding periplasmic protein precursor | PH7735_00913 | A0QYB3 | Positive | 956536 - 957492 | 34127.9 |
| inosose dehydratase | PH7735_00914 | Not Available | Positive | 957558 - 958622 | 39325.0 |
| glucose--fructose oxidoreductase precursor | PH7735_00915 | P55480 | Positive | 958619 - 959767 | 41152.8 |
| glucokinase | PH7735_00916 | C4LCT4 | Negative | 959815 - 960747 | 33199.7 |
| ribose import atp-binding protein rbsa | PH7735_00917 | P0DTT6 | Negative | 960770 - 961522 | 26935.5 |
| xylose transport system permease protein xylh | PH7735_00918 | P0AGI6 | Negative | 961522 - 962823 | 45447.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
