Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine synthetase 3 | PH7735_00889 | O87393 | Positive | 927247 - 928563 | 48128.0 |
| carnitine catabolism transcriptional activator | PH7735_00890 | Not Available | Negative | 928599 - 929552 | 35345.1 |
| sarcosine oxidase subunit beta | PH7735_00891 | O87388 | Positive | 929656 - 930906 | 45217.3 |
| sarcosine oxidase, delta subunit family | PH7735_00892 | Not Available | Positive | 930916 - 931203 | 10922.9 |
| aminomethyltransferase | PH7735_00893 | Not Available | Positive | 931200 - 934145 | 105505.0 |
| sarcosine oxidase, gamma subunit family | PH7735_00894 | Not Available | Positive | 934138 - 934695 | 19453.1 |
| formyltetrahydrofolate deformylase | PH7735_00895 | Q46339 | Positive | 934807 - 935691 | 32387.8 |
| putative l-lactate dehydrogenase operon regulatory protein | PH7735_00896 | Not Available | Positive | 935842 - 936555 | 26488.9 |
| ammonia transporter | PH7735_00897 | Q60366 | Positive | 936925 - 938304 | 48513.6 |
| hypothetical protein | PH7735_00898 | Not Available | Positive | 938335 - 938511 | 6459.82 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
