Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitrogen fixation regulation protein fixk | PH7735_00879 | Not Available | Negative | 914954 - 915682 | 26745.7 |
| ethanolamine ammonia-lyase heavy chain | PH7735_00880 | P0AEJ7 | Positive | 915931 - 917313 | 49323.5 |
| ethanolamine ammonia-lyase light chain | PH7735_00881 | Q8P8I0 | Positive | 917310 - 918068 | 26941.2 |
| aminomethyltransferase | PH7735_00882 | Q67N36 | Negative | 918147 - 920519 | 86270.8 |
| phenylacetone monooxygenase | PH7735_00883 | P32417 | Negative | 920589 - 921932 | 51092.6 |
| hypothetical protein | PH7735_00884 | Not Available | Positive | 922107 - 923390 | 47182.3 |
| rapgh repressor | PH7735_00885 | Not Available | Positive | 923439 - 924074 | 23284.8 |
| amidophosphoribosyltransferase precursor | PH7735_00886 | O87390 | Positive | 924265 - 925155 | 31880.8 |
| formylmethanofuran dehydrogenase subunit c | PH7735_00887 | O87391 | Positive | 925159 - 925845 | 23725.0 |
| glutamate synthase | PH7735_00888 | O87392 | Positive | 925856 - 927181 | 47526.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
