Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitrous oxide reductase family maturation protein nosd | PH7735_00869 | Not Available | Positive | 905405 - 906664 | 45687.7 |
| putative abc transporter atp-binding protein yxlf | PH7735_00870 | P19844 | Positive | 906654 - 907547 | 31780.5 |
| abc-type transport system involved in multi-copper enzyme maturation, permease component | PH7735_00871 | Not Available | Positive | 907544 - 908365 | 28254.4 |
| nosl | PH7735_00872 | Not Available | Positive | 908362 - 908886 | 18631.2 |
| thiamine biosynthesis lipoprotein apbe precursor | PH7735_00873 | Not Available | Positive | 908883 - 909764 | 30844.3 |
| hypothetical protein | PH7735_00874 | Not Available | Negative | 909816 - 910112 | 10888.6 |
| nitric oxide reductase cytochrome c subunit | PH7735_00875 | Q51662 | Positive | 910291 - 910743 | 16785.9 |
| nitric oxide reductase subunit b | PH7735_00876 | Q59647 | Positive | 910756 - 912123 | 51403.6 |
| denitrification regulatory protein nirq | PH7735_00877 | Q51664 | Positive | 912129 - 912950 | 29754.9 |
| nitric oxide reductase activation protein | PH7735_00878 | Q8FX38 | Positive | 912959 - 914893 | 71983.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
