Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spermidine/putrescine import atp-binding protein pota | PH7735_00859 | Q160M2 | Positive | 893569 - 894660 | 40006.1 |
| spermidine/putrescine transport system permease protein potb | PH7735_00860 | P45170 | Positive | 894660 - 895586 | 34058.2 |
| inner membrane abc transporter permease protein ydcv | PH7735_00861 | P0AFL2 | Positive | 895588 - 896397 | 29084.4 |
| spermidine/putrescine-binding periplasmic protein precursor | PH7735_00862 | Not Available | Positive | 896418 - 897455 | 37072.8 |
| (r)-stereoselective amidase | PH7735_00863 | P55176 | Positive | 897519 - 898280 | 26971.1 |
| transcriptional regulatory protein tdir | PH7735_00864 | Not Available | Positive | 898302 - 899156 | 31486.7 |
| taurine--pyruvate aminotransferase | PH7735_00865 | Q9I6J2 | Positive | 899260 - 900627 | 49833.2 |
| hypothetical protein | PH7735_00866 | Not Available | Positive | 900813 - 901292 | 16685.3 |
| putative electron transport protein yccm | PH7735_00867 | Not Available | Positive | 901289 - 903466 | 79718.3 |
| nitrous-oxide reductase precursor | PH7735_00868 | Q51705 | Positive | 903487 - 905400 | 70285.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
