Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_00049 | Not Available | Negative | 66328 - 66618 | 10243.5 |
| hypothetical protein | PH7735_00050 | Not Available | Positive | 66790 - 67326 | 20021.4 |
| ribonuclease hii | PH7735_00051 | Q5LMW0 | Positive | 67429 - 68046 | 21944.2 |
| modification methylase dpniib | PH7735_00052 | P0CAW2 | Positive | 68154 - 69269 | 41893.9 |
| adenylate cyclase 1 | PH7735_00053 | P40137 | Positive | 69486 - 70877 | 52517.5 |
| alkane 1-monooxygenase 2 | PH7735_00054 | Q0VTH3 | Negative | 70930 - 72063 | 44103.6 |
| a/g-specific adenine glycosylase | PH7735_00055 | P17802 | Negative | 72150 - 73142 | 36558.2 |
| zn-ribbon-containing, possibly rna-binding protein and truncated derivatives | PH7735_00056 | Not Available | Positive | 73290 - 73790 | 18627.4 |
| thiol-disulfide oxidoreductase d | PH7735_00057 | Not Available | Positive | 73804 - 74484 | 24540.2 |
| tetraacyldisaccharide 4'-kinase | PH7735_00058 | A4WNK8 | Negative | 74511 - 75518 | 36063.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
