Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional repressor nemr | PH7735_00849 | Not Available | Negative | 881870 - 882439 | 20398.5 |
| putrescine oxidase | PH7735_00850 | Q54IT3 | Negative | 882445 - 883500 | 38216.6 |
| anti-sigma factor, putative, chrr family | PH7735_00851 | Not Available | Negative | 883500 - 884168 | 24114.3 |
| trimethylamine dehydrogenase | PH7735_00852 | P16099 | Positive | 884408 - 886477 | 76167.1 |
| putative oxidoreductase czco | PH7735_00853 | Not Available | Positive | 886795 - 888054 | 45653.8 |
| enamine/imine deaminase | PH7735_00854 | Not Available | Positive | 888463 - 888879 | 15506.5 |
| hypothetical protein | PH7735_00855 | Not Available | Positive | 888884 - 889558 | 23076.4 |
| aldehyde dehydrogenase puuc | PH7735_00856 | Not Available | Positive | 889573 - 891069 | 53308.2 |
| hca operon transcriptional activator | PH7735_00857 | Not Available | Positive | 891098 - 892021 | 33603.6 |
| acetylornithine deacetylase | PH7735_00858 | Q9K4Z2 | Positive | 892182 - 893330 | 41467.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
