Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfate/thiosulfate import atp-binding protein cysa | PH7735_00839 | Q2K4V4 | Negative | 867131 - 868180 | 37974.8 |
| spermidine/putrescine-binding periplasmic protein precursor | PH7735_00840 | Not Available | Negative | 868242 - 869291 | 38277.0 |
| ben and cat operon transcriptional regulator | PH7735_00841 | Q9I6Z9 | Positive | 869478 - 870389 | 33688.1 |
| nitroreductase a | PH7735_00842 | Q6DLR9 | Negative | 870392 - 871078 | 25560.3 |
| long-chain-fatty-acid--coa ligase | PH7735_00843 | Q9SMT7 | Positive | 871314 - 873182 | 65388.7 |
| hemolysin, chromosomal | PH7735_00844 | Not Available | Positive | 873433 - 878409 | 169391.0 |
| hypothetical protein | PH7735_00845 | Not Available | Positive | 878439 - 878609 | 6251.6 |
| succinoglycan biosynthesis protein exoi | PH7735_00846 | Not Available | Negative | 878543 - 879217 | 25196.7 |
| virulence-regulating protein virs | PH7735_00847 | P9WMJ0 | Positive | 879588 - 880574 | 36768.4 |
| adenylate cyclase 1 | PH7735_00848 | P43524 | Positive | 880662 - 881837 | 42734.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
