Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-type oligopeptide transport system, periplasmic component | PH7735_00829 | Not Available | Positive | 858430 - 858948 | 18640.4 |
| putative fad-linked oxidoreductase | PH7735_00830 | F1QXM5 | Positive | 859025 - 860395 | 48857.6 |
| histidinol-phosphate aminotransferase | PH7735_00831 | Q987C8 | Positive | 860411 - 861610 | 42897.4 |
| carnitine catabolism transcriptional activator | PH7735_00832 | P49322 | Negative | 861625 - 862611 | 35914.7 |
| putative lumazine-binding protein | PH7735_00833 | Not Available | Positive | 862710 - 863093 | 14066.6 |
| putative enzyme related to lactoylglutathione lyase | PH7735_00834 | Not Available | Positive | 863167 - 863538 | 13300.9 |
| hemolysin | PH7735_00835 | Not Available | Positive | 863729 - 864373 | 23497.9 |
| hypothetical protein | PH7735_00836 | Not Available | Negative | 864368 - 865468 | 39299.5 |
| inner membrane abc transporter permease protein ydcv | PH7735_00837 | P45169 | Negative | 865501 - 866292 | 28521.8 |
| spermidine/putrescine transport system permease protein potb | PH7735_00838 | Not Available | Negative | 866289 - 867134 | 31586.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
