Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hth-type transcriptional regulator frlr | PH7735_00819 | P12380 | Negative | 849605 - 850294 | 25819.7 |
| glutathione transport system permease protein gsic | PH7735_00820 | Q8X6V7 | Positive | 850502 - 850786 | 10410.9 |
| dipeptide transport system permease protein dppb | PH7735_00821 | A0A0H2ZGW7 | Positive | 850961 - 851458 | 17977.1 |
| putative d,d-dipeptide transport system permease protein ddpc | PH7735_00822 | A0A0H2ZFV0 | Positive | 851462 - 852319 | 30603.0 |
| stage 0 sporulation protein kd | PH7735_00823 | P33916 | Positive | 852323 - 852736 | 14492.5 |
| glutathione import atp-binding protein gsia | PH7735_00824 | Q6D3A9 | Positive | 852827 - 853963 | 41857.5 |
| nitric oxide dioxygenase | PH7735_00825 | Q9RC40 | Negative | 854059 - 855210 | 41478.8 |
| toluene-4-sulfonate monooxygenase system iron-sulfur subunit tsam1 | PH7735_00826 | P94679 | Negative | 855212 - 856252 | 39332.8 |
| gcv operon activator | PH7735_00827 | P34818 | Negative | 856366 - 857268 | 33323.0 |
| hemin-binding lipoprotein | PH7735_00828 | Not Available | Positive | 857450 - 858433 | 35591.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
