Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid a 3-o-deacylase (pagl) | PH7735_00789 | Not Available | Negative | 816239 - 816748 | 18441.8 |
| ribosome-binding atpase ychf | PH7735_00790 | P44681 | Positive | 816883 - 817980 | 39528.3 |
| bacterial regulatory proteins, tetr family | PH7735_00791 | Not Available | Negative | 818015 - 818689 | 26197.0 |
| trimethylamine:corrinoid methyltransferase | PH7735_00792 | P0DX09 | Negative | 818691 - 820250 | 56548.7 |
| aminomethyltransferase | PH7735_00793 | Q9DBT9 | Negative | 820250 - 822661 | 87580.8 |
| putative cysteine desulfurase | PH7735_00794 | A0A1C3YKE0 | Negative | 822932 - 824191 | 44709.9 |
| Trna-ser | Not Available | Not Available | Positive | 824566 - 824655 | Not Available |
| hypothetical protein | PH7735_00796 | Not Available | Positive | 825040 - 825474 | 15329.2 |
| hypothetical protein | PH7735_00797 | Not Available | Negative | 825711 - 826772 | 38586.5 |
| hypothetical protein | PH7735_00798 | Not Available | Negative | 826831 - 828075 | 46560.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
