Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_00779 | Not Available | Positive | 807189 - 807488 | 10602.9 |
| ribulose-1,5-biphosphate synthetase | PH7735_00780 | Not Available | Positive | 807566 - 808930 | 48786.2 |
| hypothetical protein | PH7735_00781 | Not Available | Negative | 808941 - 809303 | 13149.7 |
| 6-aminohexanoate-dimer hydrolase | PH7735_00782 | Not Available | Negative | 809374 - 810540 | 42926.3 |
| hypothetical protein | PH7735_00783 | Not Available | Negative | 810600 - 811643 | 38244.1 |
| peptidyl-trna hydrolase | PH7735_00784 | Q28LA3 | Negative | 811640 - 812392 | 27141.3 |
| general stress protein ctc | PH7735_00785 | Q1GK67 | Negative | 812524 - 813159 | 22835.4 |
| l-lactate dehydrogenase | PH7735_00786 | B0T7X2 | Negative | 813340 - 814506 | 42484.1 |
| hypothetical protein | PH7735_00787 | Not Available | Negative | 814637 - 815338 | 25108.4 |
| tryptophan synthase alpha chain | PH7735_00788 | Q5LV87 | Negative | 815346 - 816137 | 27578.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
