Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_00769 | Not Available | Positive | 798059 - 798565 | 18671.2 |
| cytidylate kinase | PH7735_00770 | A8LSF1 | Positive | 798630 - 799241 | 21398.4 |
| hth-type transcriptional activator hxlr | PH7735_00771 | P42406 | Negative | 799622 - 800017 | 14686.7 |
| putative nad(p)h nitroreductase yfko | PH7735_00772 | Q4A087 | Positive | 800127 - 800768 | 23803.5 |
| hypothetical protein | PH7735_00773 | Not Available | Positive | 800988 - 802043 | 37957.7 |
| hypothetical protein | PH7735_00774 | Q6NDP1 | Positive | 802284 - 803966 | 61363.8 |
| integration host factor subunit beta | PH7735_00775 | Q1GK81 | Positive | 804347 - 804628 | 10783.9 |
| putative integral membrane protein | PH7735_00776 | Not Available | Positive | 804632 - 804982 | 13160.4 |
| n-(5'-phosphoribosyl)anthranilate isomerase | PH7735_00777 | Q28LA8 | Positive | 805067 - 805735 | 23447.5 |
| tryptophan synthase beta chain | PH7735_00778 | Q5LV94 | Positive | 805876 - 807129 | 45612.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
