Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-(hydroxymethyl)mycothiol dehydrogenase | PH7735_00739 | P80175 | Negative | 768758 - 769846 | 37588.5 |
| tetracycline resistance protein, class c | PH7735_00740 | P02981 | Negative | 769967 - 771172 | 42491.1 |
| 3-carboxy-cis,cis-muconate cycloisomerase | PH7735_00741 | Q9I6Q8 | Negative | 771176 - 772510 | 46909.3 |
| acetoin dehydrogenase e2 subunit dihydrolipoyllysine-residue acetyltransferase | PH7735_00742 | O80474 | Negative | 772513 - 773223 | 26076.2 |
| 3-oxoadipate enol-lactonase 2 | PH7735_00743 | P00632 | Negative | 773216 - 774019 | 29331.3 |
| endonuclease/exonuclease/phosphatase family protein | PH7735_00744 | Not Available | Negative | 774024 - 775217 | 44845.1 |
| l-threonine dehydratase catabolic tdcb | PH7735_00745 | A4F2N8 | Negative | 775317 - 776291 | 34108.7 |
| soluble epoxide hydrolase | PH7735_00746 | Not Available | Negative | 776288 - 777124 | 30569.6 |
| (s)-2-haloacid dehalogenase | PH7735_00747 | P24069 | Negative | 777125 - 777811 | 25125.5 |
| fkbp-type peptidyl-prolyl cis-trans isomerase slyd | PH7735_00748 | O52980 | Positive | 777973 - 778401 | 14958.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
