Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate--tetrahydrofolate ligase | PH7735_00729 | Q1GE26 | Positive | 758665 - 760341 | 59979.1 |
| t-protein | PH7735_00730 | Not Available | Positive | 760399 - 760704 | 11591.0 |
| bifunctional protein fold protein | PH7735_00731 | Q987T6 | Positive | 760716 - 761609 | 31289.2 |
| bifunctional protein fold protein | PH7735_00732 | Q1GE28 | Positive | 761624 - 762514 | 31029.6 |
| putative domain 1 | PH7735_00733 | Not Available | Negative | 762578 - 763006 | 15125.6 |
| response regulator of the lytr/algr family protein | PH7735_00734 | Not Available | Positive | 763132 - 763923 | 29298.6 |
| metallophosphoesterase, dna ligase-associated | PH7735_00735 | Not Available | Negative | 763927 - 764619 | 25127.3 |
| atp-dependent dna helicase recq | PH7735_00736 | Q57742 | Negative | 764660 - 767071 | 88693.6 |
| biofilm growth-associated repressor | PH7735_00737 | Not Available | Negative | 767075 - 767401 | 11817.3 |
| d-galactonate dehydratase | PH7735_00738 | Q6L1T2 | Negative | 767460 - 768692 | 44778.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
