Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biopolymer transport protein exbb | PH7735_00719 | P50598 | Positive | 748739 - 749413 | 24341.4 |
| biopolymer transport protein exbd | PH7735_00720 | P50599 | Positive | 749417 - 749893 | 16747.4 |
| hypothetical protein | PH7735_00721 | Not Available | Positive | 749901 - 750974 | 37663.8 |
| translocation protein tolb | PH7735_00722 | Q1GE19 | Positive | 750971 - 752284 | 47264.1 |
| minor outer membrane protein omp16 | PH7735_00723 | Q98F85 | Positive | 752359 - 752877 | 18141.2 |
| tol-pal system protein ybgf | PH7735_00724 | Not Available | Positive | 752891 - 753718 | 29390.4 |
| trna(ile)-lysidine synthase | PH7735_00725 | Q5LNU7 | Positive | 753715 - 754950 | 45013.4 |
| atp-dependent zinc metalloprotease ftsh | PH7735_00726 | A1URA3 | Positive | 755059 - 756981 | 69214.7 |
| trans-aconitate 2-methyltransferase | PH7735_00727 | A1TP97 | Positive | 757107 - 757874 | 28348.7 |
| putative metal-sulfur cluster biosynthesis proteins yuad | PH7735_00728 | O32079 | Positive | 757895 - 758494 | 21798.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
