Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal protein l11 methyltransferase | PH7735_00709 | B2S6P1 | Positive | 742433 - 743302 | 30311.0 |
| hypothetical protein | PH7735_00710 | Not Available | Positive | 743380 - 743517 | 5231.35 |
| hypothetical protein | PH7735_00711 | Not Available | Positive | 743556 - 743909 | 13216.9 |
| hypothetical protein | PH7735_00712 | Not Available | Negative | 744080 - 744280 | 7170.36 |
| crossover junction endodeoxyribonuclease ruvc | PH7735_00713 | A3PLU5 | Positive | 744609 - 745115 | 17692.4 |
| holliday junction atp-dependent dna helicase ruva | PH7735_00714 | Q168A3 | Positive | 745112 - 745795 | 23330.4 |
| holliday junction atp-dependent dna helicase ruvb | PH7735_00715 | Q5LNT8 | Positive | 745840 - 746865 | 37542.2 |
| hypothetical protein | PH7735_00716 | Not Available | Positive | 746992 - 747630 | 23343.1 |
| 2'-5'-rna ligase | PH7735_00717 | Q58963 | Positive | 747630 - 748172 | 20319.5 |
| acyl-coa thioester hydrolase ybgc | PH7735_00718 | P44679 | Positive | 748241 - 748627 | 14821.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
