Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyrroline-5-carboxylate reductase | PH7735_00699 | Not Available | Negative | 731271 - 732002 | 25489.5 |
| tyrosine recombinase xerd | PH7735_00700 | Q7ZAN7 | Negative | 732109 - 733023 | 32882.7 |
| hypothetical protein | PH7735_00701 | Not Available | Negative | 733020 - 733769 | 27766.1 |
| hypothetical protein | PH7735_00702 | Not Available | Negative | 733816 - 733905 | 3427.32 |
| glycine betaine transporter opud | PH7735_00703 | P54417 | Negative | 733902 - 735395 | 53805.7 |
| putative transaldolase | PH7735_00704 | Q5LNS5 | Negative | 735544 - 736197 | 23046.9 |
| primosomal protein n' | PH7735_00705 | P05445 | Positive | 736327 - 738522 | 79967.6 |
| putative inner membrane protein | PH7735_00706 | Not Available | Negative | 738626 - 739690 | 36597.4 |
| major facilitator superfamily protein | PH7735_00707 | Not Available | Positive | 739816 - 741045 | 45423.5 |
| multidrug export protein mepa | PH7735_00708 | Not Available | Positive | 741049 - 742380 | 46988.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
