Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein ybhl | PH7735_00689 | Q9A2A3 | Negative | 724339 - 725115 | 27622.1 |
| hypothetical protein | PH7735_00690 | Not Available | Negative | 725236 - 725445 | 7491.97 |
| hth-type transcriptional regulator yofa | PH7735_00691 | P52662 | Positive | 725573 - 726481 | 33019.7 |
| alcohol dehydrogenase | PH7735_00692 | A7RK30 | Negative | 726501 - 727466 | 33946.1 |
| transcriptional repressor dica | PH7735_00693 | A6U5H5 | Positive | 727770 - 728138 | 13924.5 |
| histidinol-phosphatase | PH7735_00694 | Q6NPM8 | Positive | 728201 - 728995 | 27784.8 |
| 8-oxoguanine deaminase | PH7735_00695 | Q9I6Z0 | Positive | 729113 - 730447 | 47474.8 |
| Trna-gly | Not Available | Not Available | Positive | 730495 - 730569 | Not Available |
| hypothetical protein | PH7735_00697 | Not Available | Positive | 730704 - 731066 | 12683.5 |
| hypothetical protein | PH7735_00698 | Not Available | Positive | 731095 - 731253 | 5425.64 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
