Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal large subunit pseudouridine synthase b | PH7735_00679 | Q9ZD06 | Negative | 714498 - 715334 | 31316.9 |
| putative peptidase | PH7735_00680 | E1V7W1 | Negative | 715883 - 717058 | 43260.8 |
| metal-dependent hydrolase | PH7735_00681 | Q5LP74 | Negative | 717060 - 717752 | 25143.2 |
| glutamyl-trna(gln) amidotransferase subunit c | PH7735_00682 | Q1GFB4 | Positive | 718036 - 718323 | 10497.5 |
| glutamyl-trna(gln) amidotransferase subunit a | PH7735_00683 | Q1GFB5 | Positive | 718323 - 719810 | 52366.1 |
| hypothetical protein | PH7735_00684 | Not Available | Positive | 719851 - 720690 | 28223.1 |
| n-acetylmuramoyl-l-alanine amidase amid precursor | PH7735_00685 | P75820 | Positive | 720698 - 721375 | 24953.8 |
| putative ribosome biogenesis gtpase rsga | PH7735_00686 | Q8D4Q0 | Negative | 721985 - 723196 | 44726.0 |
| hypothetical protein | PH7735_00687 | Q5LP83 | Positive | 723488 - 723655 | 6380.96 |
| n-acetylglutamate synthase | PH7735_00688 | Not Available | Positive | 723675 - 724274 | 22057.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
