Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysine/ornithine decarboxylase | PH7735_00669 | P40808 | Positive | 702932 - 704065 | 40443.3 |
| carbon monoxide dehydrogenase large chain | PH7735_00670 | P19913 | Positive | 704170 - 706467 | 83374.4 |
| hypothetical protein | PH7735_00671 | P39992 | Positive | 706445 - 707509 | 40253.4 |
| 5,6-dimethylbenzimidazole synthase | PH7735_00672 | Not Available | Negative | 707585 - 708256 | 24188.5 |
| hypothetical protein | PH7735_00673 | Not Available | Negative | 708262 - 709371 | 42091.1 |
| hypothetical protein | PH7735_00674 | Not Available | Negative | 709420 - 709956 | 19720.7 |
| putative virion core protein (lumpy skin disease virus) | PH7735_00675 | Not Available | Negative | 710053 - 711195 | 41381.4 |
| hypothetical protein | PH7735_00676 | Not Available | Negative | 711218 - 712114 | 32478.4 |
| tela-like protein | PH7735_00677 | P37535 | Negative | 712148 - 713347 | 43824.7 |
| hypothetical protein | PH7735_00678 | Not Available | Negative | 713352 - 714257 | 32974.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
